Licenses

VaxPress

VaxPress is developed and maintained by the Hyeshik Chang Lab at Seoul National University.

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

LinearFold

VaxPress’ singularity container image includes LinearFold, which is developed by Liang Huang, He Zhang, Dezhong Deng, Kai Zhao, Kaibo Liu, David Hendrix, and David Mathews.

Following terms and conditions apply to the use of LinearFold:

Disclaimer and Copyright

The programs, library and source code of the LinearFold Package are free software. They are distributed in the hope that they will be useful but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Permission is granted for research, educational, and commercial use and modification so long as 1) the package and any derived works are not redistributed for any fee, other than media costs, 2) proper credit is given to the authors. Please cite the following paper:

Liang Huang, He Zhang, Dezhong Deng, Kai Zhao, Kaibo Liu, David Hendrix, and David Mathews (2019). LinearFold: Linear-Time Approximate RNA Folding by 5’-to-3’ Dynamic Programming and Beam Search. Bioinformatics, Vol. 35, July 2019, Special Issue of ISMB 2019 Proceedings.

corresponding author: Liang Huang <liang.huang.sh@gmail.com>

If you want to include this software in a commercial product, please contact the corresponding author.